Resources

Check out some of these links for additional information about GWAS:

• An overview of GWAS and linear mixed models
• A tutorial on PCA
• The 1000 Genomes Project
• The sim1000G paper for simulating individuals from a population and a tutorial by the authors
• The original KING paper for estimating kinship
• The PC-AiR method for finding an ancestry-representative subset
• The PC-Relate method for correcting PCA estimates for recent shared genetic ancestry
• Other modules for conducting GWAS in R using GENESIS:
  • GWAS using GENESIS
  • Population stratification using GENESIS
  • WGS computational pipeline 2020
  • WGS computational pipeline 2021
• The SNPRelate package
• The GWASTools package